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Commit 0e5dfaae authored by Bengt Giger's avatar Bengt Giger
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Pytorch in conda

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......@@ -71,8 +71,7 @@ RUN Rscript >/dev/null 2>&1 -e "install.packages(pkgs=c( \
# Torch: failed to get filesystem from image: mkdir /opt/conda/lib/python3.12/site-packages/torch/include/ATen: file exists
# https://github.com/GoogleContainerTools/kaniko/issues/3091
RUN PIP_PROXY=http://proxy.ethz.ch:3128 pip3 install --proxy=http://proxy.ethz.ch:3128 --default-timeout=100 torch && \
conda config --set default_threads 4 && \
RUN conda config --set default_threads 4 && \
mamba install -q -c defaults -c conda-forge -c bioconda -c bokeh \
arviz \
autogluon \
......@@ -106,6 +105,7 @@ RUN PIP_PROXY=http://proxy.ethz.ch:3128 pip3 install --proxy=http://proxy.ethz.c
pymrio \
pyteomics \
pytesseract \
pytorch::pytorch \
pyspellchecker \
rdkit \
root \
......
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