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Commit 54bb818e authored by Bengt Giger's avatar Bengt Giger
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Install torch first

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......@@ -68,7 +68,11 @@ RUN Rscript >/dev/null 2>&1 -e "install.packages(pkgs=c( \
# Python and R from Condaforge
##############################
RUN conda config --set default_threads 4 && \
# Torch: failed to get filesystem from image: mkdir /opt/conda/lib/python3.12/site-packages/torch/include/ATen: file exists
# https://github.com/GoogleContainerTools/kaniko/issues/3091
RUN PIP_PROXY=http://proxy.ethz.ch:3128 pip3 install --proxy=http://proxy.ethz.ch:3128 --default-timeout=100 torch && \
conda config --set default_threads 4 && \
mamba install -q -c defaults -c conda-forge -c bioconda -c bokeh \
arviz \
autogluon \
......@@ -189,7 +193,6 @@ RUN PIP_PROXY=http://proxy.ethz.ch:3128 pip3 install --proxy=http://proxy.ethz.c
summa \
tensorflow \
"tensorflow-probability[jax]" \
torch \
umap \
umap-learn \
vpython \
......
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