Install torch first

Dockerfile

@@ -68,7 +68,11 @@ RUN Rscript >/dev/null 2>&1 -e "install.packages(pkgs=c( \
 # Python and R from Condaforge
 ##############################
 
-RUN conda config --set default_threads 4 && \
+# Torch: failed to get filesystem from image: mkdir /opt/conda/lib/python3.12/site-packages/torch/include/ATen: file exists
+# https://github.com/GoogleContainerTools/kaniko/issues/3091
+
+RUN PIP_PROXY=http://proxy.ethz.ch:3128 pip3 install --proxy=http://proxy.ethz.ch:3128 --default-timeout=100 torch && \
+  conda config --set default_threads 4 && \
   mamba install -q -c defaults -c conda-forge -c bioconda -c bokeh \
   arviz \
   autogluon \
@@ -189,7 +193,6 @@ RUN PIP_PROXY=http://proxy.ethz.ch:3128 pip3 install --proxy=http://proxy.ethz.c
   summa \
   tensorflow \
   "tensorflow-probability[jax]" \
-  torch \
   umap \
   umap-learn \
   vpython \