Update README.md, pipeline_structural_analysis_v2.ipynb, pymol_scripts/findseq.py, pymol_scripts/execute_commands.py, pymol_scripts/README.md, Data/Ecoli/Ecoli_nucleotide_binding.json, Data/Ecoli/Ecoli_metal_binding.json, Data/Ecoli/Ecoli_calcium_binding.json, Data/Ecoli/UPseq_Ecoli.json, Data/Ecoli/Ecoli_bind_sites.json, Data/Ecoli/Ecoli_active_sites.json, Data/Ecoli/Ecoli_DNA_binding.json, Data/Ecoli/UPPSI_Ecoli.json, Data/Ecoli/UPID_VSL2B_Ecoli.json, Data/Scerevisiae/Scerevisiae_nucleotide_binding.json, Data/Scerevisiae/Scerevisiae_metal_binding.json, Data/Scerevisiae/Scerevisiae_bind_sites.json, Data/Scerevisiae/Scerevisiae_calcium_binding.json, Data/Scerevisiae/Scerevisiae_active_sites.json, Data/Scerevisiae/UPPSI_Scerevisiae.json, Data/Scerevisiae/UPseq_Scerevisiae.json, Data/Scerevisiae/UPID_VSL2B_Scerevisiae.json, Data/Human/human_nucleotide_binding.json, Data/Human/human_metal_binding.json, Data/Human/human_active_sites.json, Data/Human/human_calcium_binding.json, Data/Human/human_bind_sites.json,...