Miscellaneous fixes & improvements (!5) · Merge requests · Scientific IT Services / alphafold_on_euler · GitLab

To receive notifications about scheduled maintenance, please subscribe to the mailing-list gitlab-operations@sympa.ethz.ch. You can subscribe to the mailing-list at https://sympa.ethz.ch

jjaenes requested to merge jjaenes/alphafold_on_euler:main into main Aug 15, 2022

Fix --skip_minimization
Support fastas with multi-line sequences
Add --reduced_dbs to run AF2 with —db_preset=reduced_dbs
Add --reduced_rsync to skip copying large results files (MSAs, pickles) from the compute nodes
Place AF2 output & log files relative to the working directory (-w)

Edited Aug 15, 2022 by jjaenes