Problem loading h5py
Running the following command from a jupyter-on-euler
import h5py
results in the following error:
ImportError Traceback (most recent call last)
<ipython-input-2-c9f0b8c65221> in <module>
----> 1 import h5py
/cluster/apps/python/3.6.1/x86_64/lib64/python3.6/site-packages/h5py/__init__.py in <module>
24 # We tried working around this by using "package_dir" but that breaks Cython.
25 try:
---> 26 from . import _errors
27 except ImportError:
28 import os.path as _op
ImportError: libhdf5.so.8: cannot open shared object file: No such file or directory
I'm starting jupyter using
./start_jupyter_nb.sh --username omelkonyan --numcores 8 --runtime 02:30 --memory 32768 --softwarestack old
When I'm trying to import h5py by ssh-ing manually and running python3 shell, everything works. Am I missing something? Thx!