... | ... | @@ -81,17 +81,23 @@ Description: Similar to ECG 3T, but acquired on a Siemens system with only one l |
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Siemens - HCP
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The Human Connectome Project uses Siemens scanners, and the logfile format that comes with their published data seems to be pre-converted and custom (even though the documentation desribes the VB format). We have implemented and own reader for that and written a little tutorial for dataset **178748** here:
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The Human Connectome Project uses Siemens scanners, and the logfile format that comes with their published data seems to be pre-converted and custom (even though the documentation desribes the VB format). We have implemented an own reader for that and written a little tutorial for a single subject dataset of the HCP.
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https://github.com/translationalneuromodeling/tapas/issues/6#issuecomment-361001716
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You will have to download the dataset from the [HCP](https://db.humanconnectome.org/) yourself, we just provide the matlab batches here.
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If you download the whole dataset (including functional image files), this example with the additional batches mentioned below also demonstrates how to use the toolbox for model assessment using statistical maps (F-contrasts).
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### HCP, Subject 178748
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You will have to download the dataset from the [HCP](https://db.humanconnectome.org/) yourself, we just provide the matlab batches and the physiological logfile `tfMRI_MOTOR_LR_Physio_log.txt` here.
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For consistency with the other example files, the batch files have been renamed compared to the blog entry:
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- `batch_preproc.m` -> `batch_preproc.m`
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- `batch_physio.m` -> `siemens_hcp_ppu3t_spm_job.m`
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- `batch_glm.m` -> `batch_glm.m`
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If you want to run the preproc and glm batch, place them on the same level as the subject folder `178748` for the downloaded data. The physio-batch shall reside in the same folder as the physiological logfile `tfMRI_MOTOR_LR_Physio_log.txt`.
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Siemens - VD/VE Tics
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