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Restructure

brgerhar requested to merge restructure into master
  • Change file extensions to .cpp / .hpp (still missing: solver, neighbourhoods, main)
  • Segregation: encapsulate 3rd party dependencies in cpp files (utils/timer.hpp: MPI.h, materials/cubic_spline: gsl/gsl_spline.h, kim)
  • Complete cmake modules for everything except solver, neighbourhoods (this includes adding a cpp file for each header)

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