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Merge for new release

Merged Charles McGrath requested to merge Charles-Dev into development
  • Update code documentation to reflect changes.

  • Trajectories transition to trajectory+additional fields

  • Refilling flow reseed threshold

  • Refilling flow particle out of bounding box check (check if faster pre compiled version in VTK/Pyvista

  • Phase ramp fix by rolling...

  • RF pulse FA train

  • RF hardpulse module

  • MPS to XYZ rotation and advanced slice definition

  • Code Change

  • Define lookup fields on initialisation of flow dataset

  • Add functionality for adding properties dynamically to particles (flow dataset) and shift T2s to here

  • Pass kwargs to submodules

  • Example for static bloch (broadcasting static particles)

  • Templates for simulation definition

  • Meta Documentation

  • Readme separating analytic and flow

  • Restructure/reorganize notebooks

  • Mark untested modules as experimental (T2s, turbulence)

Edited by Jonathan Weine

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