Commits · 815a5ba680e443ca0ef4d42cbef54cffcd1a4d39 · ETH_ToxLab / O6meG-seq · GitLab

Snippets Groups Projects

To receive notifications about scheduled maintenance, please subscribe to the mailing-list gitlab-operations@sympa.ethz.ch. You can subscribe to the mailing-list at https://sympa.ethz.ch

Oct 25, 2024
- Update README.md · 815a5ba6
  Jasmina Kubitschek authored 4 months ago
  
  v2.0
  
  815a5ba6
- removed testing folder · b2713569
  Jasmina Kubitschek authored 4 months ago
  
  b2713569
- Merge branch 'revision_1' · d37408f3
  Jasmina Kubitschek authored 4 months ago
  
  d37408f3
- cleanup for release · 451a0f49
  Jasmina Kubitschek authored 4 months ago
  
  451a0f49
Oct 24, 2024
- checked and prepared plotting notebooks for release · b9365846
  Jasmina Kubitschek authored 4 months ago
  
  b9365846
Oct 23, 2024
- Adjusted Supp fig 11 A and B · 043f2901
  Jasmina Kubitschek authored 4 months ago
  
  043f2901
Oct 14, 2024
- plotted trinucleotides in genes, maybe add to Supp Fig 11 · 2c888c76
  Jasmina Kubitschek authored 4 months ago
  
  2c888c76
- Push conflict in different files. Merge branch 'revision_1' of... · 7709a57a
  Jasmina Kubitschek authored 4 months ago
  
  Push conflict in different files. Merge branch 'revision_1' of https://gitlab.ethz.ch/eth_toxlab/o6meg-seq into revision_1
  7709a57a
- finished GEO transfers, checked checksum · 16184215
  Jasmina Kubitschek authored 4 months ago
  
  16184215
- Update LICENSE · 608bb824
  Jasmina Kubitschek authored 4 months ago
  
  608bb824
- Update README.md · 0ae2c34f
  Jasmina Kubitschek authored 4 months ago
  
  0ae2c34f
- prepared files for GEO · 0835745e
  Jasmina Kubitschek authored 4 months ago
  
  0835745e
Oct 11, 2024
- Supp Fig 11, scaled to unexpr. · 30420779
  Jasmina Kubitschek authored 5 months ago
  
  30420779
- plotted Supp Figure 11 · 075aef3f
  Jasmina Kubitschek authored 5 months ago
  
  075aef3f
Oct 10, 2024
- made figure for reviewer answer 10 kb lineplot · 36ea4a36
  Jasmina Kubitschek authored 5 months ago
  
  36ea4a36
Oct 09, 2024
- more cleanup · f6e29203
  Jasmina Kubitschek authored 5 months ago
  
  f6e29203
- updated notebook names (figure number) and moved pip lists to the end of all notbooks · 7c1356df
  Jasmina Kubitschek authored 5 months ago
  
  7c1356df
- adjusted quant figures · e2add949
  Jasmina Kubitschek authored 5 months ago
  
  e2add949
- adjusted repair test figure · c8f548d3
  Jasmina Kubitschek authored 5 months ago
  
  c8f548d3
Aug 23, 2024
- found problem in metaprofiles, normalized violin plots to G count instead of... · 2b25e086
  Jasmina Kubitschek authored 6 months ago
  
  found problem in metaprofiles, normalized violin plots to G count instead of gene length, Figure 4 DONE
  2b25e086
Aug 22, 2024
- repair test plot, adjusting some other plots · cff1046a
  Jasmina Kubitschek authored 6 months ago
  
  cff1046a
Aug 20, 2024
- adjusted some plots for the figures · 3c892b69
  Jasmina Kubitschek authored 6 months ago
  
  3c892b69
Aug 19, 2024
- tried using smaller bin sizes for Fig3,SI Fig7 and division for Fig4 · a4a74c4e
  Jasmina Kubitschek authored 6 months ago
  
  a4a74c4e
- plotted SI Fig 8 · 1afa1c23
  Jasmina Kubitschek authored 6 months ago
  
  1afa1c23
- plotted SI figure 7 · dea5f7cf
  Jasmina Kubitschek authored 6 months ago
  
  dea5f7cf
- plotted gene profiles, something is still off with zero bins · 8ae2d916
  Jasmina Kubitschek authored 6 months ago
  
  8ae2d916
- finished violin plots Fig4 step 6 · 12c38736
  Jasmina Kubitschek authored 6 months ago
  
  12c38736
- minor changes for plotting in Fig4 step4 · ab7e7d62
  Jasmina Kubitschek authored 6 months ago
  
  ab7e7d62
- finished violin plots Fig4 step 6 · abd97397
  Jasmina Kubitschek authored 6 months ago
  
  abd97397
- minor changes for plotting in Fig4 step4 · 913a01c6
  Jasmina Kubitschek authored 6 months ago
  
  913a01c6
Aug 16, 2024
- worked on Figure4, still issues with normalizations · c42fd04e
  Jasmina Kubitschek authored 6 months ago
  
  c42fd04e
- forgot checkpoint file for SI fig 5 · cc94c85c
  Jasmina Kubitschek authored 6 months ago
  
  cc94c85c
- moved testing_scripts_and_notebooks folder to o6meG-seq top level · 3882de96
  Jasmina Kubitschek authored 6 months ago
  
  3882de96
- got quant data and plotted SI 5 · be8ff4ce
  Jasmina Kubitschek authored 6 months ago
  
  be8ff4ce
Aug 15, 2024
- plotted Fig4 partially, tried with median (WIP) · f5c3cf5b
  Jasmina Kubitschek authored 6 months ago
  
  f5c3cf5b
Aug 14, 2024
- plotting with final data, 100KB and 10KB binned, 1KB open, Figure4 WIP · 81d44a59
  Jasmina Kubitschek authored 6 months ago
  
  81d44a59
Aug 12, 2024
- started plotting final figures, 100kb binning and norm done, 1kb binned but not yet normalized · 3a875cf5
  Jasmina Kubitschek authored 7 months ago
  
  3a875cf5
- finished preprocessing · 54fb0437
  Jasmina Kubitschek authored 7 months ago
  
  54fb0437
Aug 08, 2024
- cleanup of preprocessing folder, started final preprocessing · f58dd718
  Jasmina Kubitschek authored 7 months ago
  
  f58dd718
Jul 31, 2024
- worked on Fig4, tried to solve font issue · d01dd765
  Jasmina Kubitschek authored 7 months ago
  
  d01dd765