Dockerfile cleanup

Dockerfile

@@ -70,6 +70,8 @@ RUN Rscript >/dev/null 2>&1 -e "install.packages(pkgs=c( \
 
 # Packages breaking Jupyter or other packages
   # autogluon \
+  # pyvista \
+  # root \  # breaks sqlite3, hub fails to start
 
 RUN conda config --set default_threads 4 && \
   mamba install -q -c defaults -c conda-forge -c bioconda -c bokeh \
@@ -103,7 +105,6 @@ RUN conda config --set default_threads 4 && \
   pyteomics \
   pytesseract \
   pyspellchecker \
-  # pyvista \
   rdkit \
   sinfo \
   scanpy \
@@ -134,10 +135,6 @@ RUN conda config --set default_threads 4 && \
   && \
   mamba clean --all
   
-# Disabled:
-# root \  # breaks sqlite3, hub fails to start
-
-
 ##################
 # Python from pypi
 ##################