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Commit 4fdd717c authored by Bengt Giger's avatar Bengt Giger
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Dockerfile cleanup

parent 5fad3980
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Pipeline #302456 passed
......@@ -70,6 +70,8 @@ RUN Rscript >/dev/null 2>&1 -e "install.packages(pkgs=c( \
# Packages breaking Jupyter or other packages
# autogluon \
# pyvista \
# root \ # breaks sqlite3, hub fails to start
RUN conda config --set default_threads 4 && \
mamba install -q -c defaults -c conda-forge -c bioconda -c bokeh \
......@@ -103,7 +105,6 @@ RUN conda config --set default_threads 4 && \
pyteomics \
pytesseract \
pyspellchecker \
# pyvista \
rdkit \
sinfo \
scanpy \
......@@ -134,10 +135,6 @@ RUN conda config --set default_threads 4 && \
&& \
mamba clean --all
# Disabled:
# root \ # breaks sqlite3, hub fails to start
##################
# Python from pypi
##################
......
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