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Commit e586d234 authored by Horea Christian's avatar Horea Christian

Added example ebuild

parent 131751bb
<?xml version='1.0' encoding='UTF-8'?>
<!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd">
<pkgmetadata>
<maintainer type="person">
<email>chr@chymera.eu</email>
<name>Horea Christian</name>
</maintainer>
<longdescription lang="en">
SAMRI (Small Animal Magnetic Resonance Imaging) — pronounced "Sam-rye" — provides
fMRI preprocessing, metadata parsing, and data analysis functions and workflows.
SAMRI integrates functionalities from a number of other packages to create
higher-level tools. The resulting interfaces aim to maximize reproducibility,
simplify batch processing, and minimize the number of function calls required to
generate figures and statistical summaries from the raw data.
</longdescription>
<upstream>
<remote-id type="github">IBT-FMI/SAMRI</remote-id>
</upstream>
</pkgmetadata>
# Copyright 1999-2019 Gentoo Authors
# Distributed under the terms of the GNU General Public License v2
EAPI=7
PYTHON_COMPAT=( python{3_5,3_6} )
inherit distutils-r1
DESCRIPTION="Small Animal Magnetic Resonance Imaging"
HOMEPAGE="https://github.com/IBT-FMI/SAMRI"
SRC_URI="https://github.com/IBT-FMI/SAMRI/archive/${PV}.tar.gz -> ${P}.tar.gz"
LICENSE="GPL-3"
SLOT="0"
IUSE="test"
KEYWORDS="~amd64 ~x86"
DEPEND="
test? (
dev-python/pytest[${PYTHON_USEDEP}]
sci-biology/samri_bidsdata
sci-biology/samri_bindata
)
"
RDEPEND="
dev-python/argh[${PYTHON_USEDEP}]
dev-python/joblib[${PYTHON_USEDEP}]
>=dev-python/matplotlib-2.0.2[${PYTHON_USEDEP}]
>=dev-python/numpy-1.13.3[${PYTHON_USEDEP}]
dev-python/pandas[${PYTHON_USEDEP}]
dev-python/seaborn[${PYTHON_USEDEP}]
dev-python/statsmodels[${PYTHON_USEDEP}]
media-gfx/blender
>=sci-biology/fsl-5.0.9
sci-biology/bru2nii
sci-biology/mouse-brain-atlases
sci-libs/nibabel[${PYTHON_USEDEP}]
>=sci-libs/nipy-0.4.1[${PYTHON_USEDEP}]
>=sci-libs/nipype-0.14.0_pre20170830[${PYTHON_USEDEP}]
<=sci-libs/pybids-0.6.5[${PYTHON_USEDEP}]
sci-libs/scikits_image[${PYTHON_USEDEP}]
sci-libs/scipy[${PYTHON_USEDEP}]
sci-biology/ants
sci-biology/afni
sci-biology/nilearn[${PYTHON_USEDEP}]
"
S="${WORKDIR}/SAMRI-${PV}"
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