diff --git a/scientific_software_management/samri/metadata.xml b/scientific_software_management/samri/metadata.xml new file mode 100644 index 0000000000000000000000000000000000000000..e044d10213e4d43d243be169609637b1a4cf419a --- /dev/null +++ b/scientific_software_management/samri/metadata.xml @@ -0,0 +1,19 @@ +<?xml version='1.0' encoding='UTF-8'?> +<!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd"> +<pkgmetadata> + <maintainer type="person"> + <email>chr@chymera.eu</email> + <name>Horea Christian</name> + </maintainer> + <longdescription lang="en"> + SAMRI (Small Animal Magnetic Resonance Imaging) — pronounced "Sam-rye" — provides + fMRI preprocessing, metadata parsing, and data analysis functions and workflows. + SAMRI integrates functionalities from a number of other packages to create + higher-level tools. The resulting interfaces aim to maximize reproducibility, + simplify batch processing, and minimize the number of function calls required to + generate figures and statistical summaries from the raw data. + </longdescription> + <upstream> + <remote-id type="github">IBT-FMI/SAMRI</remote-id> + </upstream> +</pkgmetadata> diff --git a/scientific_software_management/samri/samri-0.4.ebuild b/scientific_software_management/samri/samri-0.4.ebuild new file mode 100644 index 0000000000000000000000000000000000000000..962c79bf8ad523ff7ce649236f137b8bdedcf512 --- /dev/null +++ b/scientific_software_management/samri/samri-0.4.ebuild @@ -0,0 +1,49 @@ +# Copyright 1999-2019 Gentoo Authors +# Distributed under the terms of the GNU General Public License v2 + +EAPI=7 + +PYTHON_COMPAT=( python{3_5,3_6} ) + +inherit distutils-r1 + +DESCRIPTION="Small Animal Magnetic Resonance Imaging" +HOMEPAGE="https://github.com/IBT-FMI/SAMRI" +SRC_URI="https://github.com/IBT-FMI/SAMRI/archive/${PV}.tar.gz -> ${P}.tar.gz" + +LICENSE="GPL-3" +SLOT="0" +IUSE="test" +KEYWORDS="~amd64 ~x86" + +DEPEND=" + test? ( + dev-python/pytest[${PYTHON_USEDEP}] + sci-biology/samri_bidsdata + sci-biology/samri_bindata + ) +" +RDEPEND=" + dev-python/argh[${PYTHON_USEDEP}] + dev-python/joblib[${PYTHON_USEDEP}] + >=dev-python/matplotlib-2.0.2[${PYTHON_USEDEP}] + >=dev-python/numpy-1.13.3[${PYTHON_USEDEP}] + dev-python/pandas[${PYTHON_USEDEP}] + dev-python/seaborn[${PYTHON_USEDEP}] + dev-python/statsmodels[${PYTHON_USEDEP}] + media-gfx/blender + >=sci-biology/fsl-5.0.9 + sci-biology/bru2nii + sci-biology/mouse-brain-atlases + sci-libs/nibabel[${PYTHON_USEDEP}] + >=sci-libs/nipy-0.4.1[${PYTHON_USEDEP}] + >=sci-libs/nipype-0.14.0_pre20170830[${PYTHON_USEDEP}] + <=sci-libs/pybids-0.6.5[${PYTHON_USEDEP}] + sci-libs/scikits_image[${PYTHON_USEDEP}] + sci-libs/scipy[${PYTHON_USEDEP}] + sci-biology/ants + sci-biology/afni + sci-biology/nilearn[${PYTHON_USEDEP}] +" + +S="${WORKDIR}/SAMRI-${PV}"