Commit 2bf9f2ab authored by jarunanp's avatar jarunanp
Browse files

Update README.md

parent f7197d23
......@@ -8,9 +8,11 @@ Usage:
./setup_alphafold_run_script.sh -f [Fasta file] -w [work directory] --max_template_date yyyy-mm-dd
```
Example:
```
[jarunanp@eu-login-20 alphafold_on_euler]$ ./setup_alphafold_run_script.sh -f ../../fastafiles/IFGSC_6mer.fasta
Reading /cluster/work/sis/cdss/jarunanp/21_12_alphafold_benchmark/fastafiles/IFGSC_6mer.fasta
[jarunanp@eu-login-20 alphafold_on_euler]$ ./setup_alphafold_run_script.sh -f ../../fastafiles/IFGSC_6mer.fasta -w $SCRATCH/alphafold_run
Reading /cluster/home/jarunanp/alphafold_run/fastafiles/IFGSC_6mer.fasta
Protein name: IFGSC_6mer
Number of sequences: 6
Protein type: multimer
......@@ -24,5 +26,5 @@ Usage:
Number of GPUs:
Total GPU memory:
Total scratch space:
Output an LSF run script for AlphaFold2: /cluster/work/sis/cdss/jarunanp/21_12_alphafold_benchmark/scripts/alphafold_on_euler/run_alphafold.bsub
Output an LSF run script for AlphaFold2: /cluster/scratch/jarunanp/21_12_alphafold_benchmark/scripts/alphafold_on_euler/run_alphafold.bsub
```
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