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Update FAQ; command line usage of compiled SPM with PhysIO authored by Lars Kasper's avatar Lars Kasper
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FAQ.md
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...@@ -285,6 +285,14 @@ Yes, our friends at [NeuroDesk](https://neurodesk.github.io/) provide a docker c ...@@ -285,6 +285,14 @@ Yes, our friends at [NeuroDesk](https://neurodesk.github.io/) provide a docker c
Internally, this is using a compiled version of SPM with PhysIO. Contact us if you want to compile SPM with PhysIO yourself - for example, to deploy your own modifications of PhysIO to collaborators without Matlab. Internally, this is using a compiled version of SPM with PhysIO. Contact us if you want to compile SPM with PhysIO yourself - for example, to deploy your own modifications of PhysIO to collaborators without Matlab.
Once SPM+PhysIO is compiled and you have the right Matlab Runtime Environment installed on your computer (determined by the Matlab version used for compilation), you can run a PhysIO SPM Batch file (`.m` or `.mat`) by calling
```
./run_spm12.sh ../MATLAB_Runtime/v99 batch physio_batch.mat
```
If you omit the batch file (but keep the keyword `batch`), this will just open the Batch Editor to interactively create and run a PhysIO batch.
## 16. I cannot find the answer to my question in the FAQ. Whom do I ask for help? ## 16. I cannot find the answer to my question in the FAQ. Whom do I ask for help?
We are very happy to provide support on how to use the PhysIO Toolbox. However, We are very happy to provide support on how to use the PhysIO Toolbox. However,
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