Commit ca7147ed authored by Lars Kasper's avatar Lars Kasper
Browse files

R2022a-v8.1.0

parent 02ea9e32
...@@ -4,24 +4,31 @@ RELEASE INFORMATION ...@@ -4,24 +4,31 @@ RELEASE INFORMATION
Current Release Current Release
--------------- ---------------
*Current version: PhysIO Toolbox Release R2021a, v8.0.1* *Current version: PhysIO Toolbox Release R2022a, v8.1.0*
June 16th, 2021 April 5th, 2022
SCHEDULED Minor Release Notes (v8.1.0) Minor Release Notes (v8.1.0)
-------------------------------------- ----------------------------
### Added ### Added
- Brain Imaging Data Structure (BIDS) export format (`.tsv.gz`, `.json`) to save raw physiological recordings after synchronization with scanner timing (internal gitlab issue #91) - Compatibility of whole code base with Matlab compiler in order to run `spm_make_standalone`
- following current BIDS specification on [continuous physiological recordings](https://bids-specification.readthedocs.io/en/stable/04-modality-specific-files/06-physiological-and-other-continuous-recordings.html) and its [metadata]( https://bids-specification.readthedocs.io/en/stable/02-common-principles.html#tabular-files) - provides oppurtunity to run SPM Batch Editor GUI version of PhysIO without Matlab license requirement
- single tab-separated values file with columns for cardiac and respiratory recordings - compiled version readily available within [Neurodesk](https://neurodesk.github.io/tutorials/functional_imaging/physio/)
- if sampling frequencies of the two differ, upsampling to higher frequency is performed - BIDS Read-in for separate cardiac/respiratory trace files (e.g., due to different sampling frequencies)
- see GitHub Issue #164 and pull request #167 by @alexsayal
- Additional unit tests for new read-in and example data
### Changed ### Changed
- Switch for certain toolbox functions (e.g., `imtool`) to only run in
non-compiled code
### Fixed ### Fixed
- Documentation (function headers, see Github issue #149)
- Typos in unused function (spotted in compilation)
- Synchronization SIEMENS AcquisitionLog / Physiological files (see Github issue #172)
- better visualization of sync, clearer error messages if dummy scans not found
Bugfix Release Notes (v8.0.1) Bugfix Release Notes (v8.0.1)
----------------------------- -----------------------------
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...@@ -4,15 +4,15 @@ Kasper, L., Bollmann, S., Diaconescu, A.O., Hutton, C., Heinzle, J., ...@@ -4,15 +4,15 @@ Kasper, L., Bollmann, S., Diaconescu, A.O., Hutton, C., Heinzle, J.,
Iglesias, S., Hauser, T.U., Sebold, M., Manjaly, Z.-M., Pruessmann, K.P., Iglesias, S., Hauser, T.U., Sebold, M., Manjaly, Z.-M., Pruessmann, K.P.,
Stephan, K.E., 2017. The PhysIO Toolbox for Modeling Physiological Noise Stephan, K.E., 2017. The PhysIO Toolbox for Modeling Physiological Noise
in fMRI Data. in fMRI Data.
Journal of Neuroscience Methods 276, 5672. Journal of Neuroscience Methods 276, 56-72.
doi:10.1016/j.jneumeth.2016.10.019 doi:10.1016/j.jneumeth.2016.10.019
Please also cite the parent software collection TAPAS: Please also cite the parent software collection TAPAS:
Frässle, S., Aponte, E.A., Bollmann, S., Brodersen, K.H., Do, C.T., Harrison, O.K., Fraessle, S., Aponte, E.A., Bollmann, S., Brodersen, K.H., Do, C.T., Harrison, O.K.,
Harrison, S.J., Heinzle, J., Iglesias, S., Kasper, L., Lomakina, E.I., Mathys, C., Harrison, S.J., Heinzle, J., Iglesias, S., Kasper, L., Lomakina, E.I., Mathys, C.,
Müller-Schrader, M., Pereira, I., Petzschner, F.H., Raman, S., Schöbi, D., Mueller-Schrader, M., Pereira, I., Petzschner, F.H., Raman, S., Schoebi, D.,
Toussaint, B., Weber, L.A., Yao, Y., Stephan, K.E., 2021. Toussaint, B., Weber, L.A., Yao, Y., Stephan, K.E., 2021.
TAPAS: an open-source software package for Translational Neuromodeling and Computational Psychiatry. TAPAS: an open-source software package for Translational Neuromodeling and Computational Psychiatry.
Frontiers in Psychiatry 12, 857. Frontiers in Psychiatry 12, 857.
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TAPAS PhysIO Toolbox TAPAS PhysIO Toolbox
==================== ====================
*Current version: Release 2021a, v8.0.1* *Current version: Release 2022a, v8.1.0*
> Copyright (C) 2012-2021 > Copyright (C) 2012-2022
> Lars Kasper > Lars Kasper
> <kasper@biomed.ee.ethz.ch> > <kasper@biomed.ee.ethz.ch>
> >
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