- Brain Imaging Data Structure (BIDS) export format (`.tsv.gz`, `.json`) to save raw physiological recordings after synchronization with scanner timing (internal gitlab issue #91)
- following current BIDS specification on [continuous physiological recordings](https://bids-specification.readthedocs.io/en/stable/04-modality-specific-files/06-physiological-and-other-continuous-recordings.html) and its [metadata](https://bids-specification.readthedocs.io/en/stable/02-common-principles.html#tabular-files)
- single tab-separated values file with columns for cardiac and respiratory recordings
- if sampling frequencies of the two differ, upsampling to higher frequency is performed
### Changed
### Fixed
Minor Release Notes (R2020a, v7.3.0)
------------------------------------
### Added
- Added descriptive names for the multiple regressors matrix.
- Closes GitLab issue #82.
- Now possible to straightforwardly inspect `physio.model.R` and the
contents of `physio.model.output_multiple_regressors` using
`physio.model.R_column_names`.
- Added `tapas_physio_guess_regressor_names()` to maintain backwards
compatibility.
- New example datasets Siemens VB PPU3T with DICOM Sync (courtesy of Alexander Ritter, Jena, Germany)
- More versatile control on figure visibility, saving and closing during `main` and `review` runs of PhysIO
- feature provided by Stephan Heunis, TU Eindhoven, The Netherlands (github issue #89)
- figures can now be plotted in the background without disturbing interactive Matlab sessions, and can be (more) selectively saved and closed during execution of `tapas_physio_review`
- more comprehensive support within `tapas_physio_main_create_regressors` to follow
Bugfix Release Notes (v7.2.8)
-----------------------------
### Fixed
- Bug(s) when checking SPM and PhysIO paths in `tapas_physio_init` under
certain particular Matlab path environment settings (Gitlab merge request !37)
- e.g., when add `physio-public/code` manually without subfolder
- or if spm existed as a folder name without being added to path
- Synchronization to DICOM time stamp did not work for extended physiological recordings (not starting/ending with functional run) due to ignored absolute start time stamp
- reported by Alexander Ritter, Jena, Germany (Github issue #55, Gitlab #87)
- probably fixes Github issue #63 (Gitlab #86) as well
Bugfix Release Notes (v7.2.1)
-----------------------------
### Changed
- PhysIO: removed Matlab statistics toolbox dependency for PCA by SVD implementation (thanks to Benoît Beranger, [pull request 64](https://github.com/translationalneuromodeling/tapas/pull/64))
- new function `tapas_physio_pca` allows for switch between stats and native SVD implementation of PCA
- comes with unit tests checking equivalency
Minor Release Notes (R2019b, v7.2.0)
...
...
@@ -44,6 +156,7 @@ Batch Editor and Matlab-only configuration scripts. Reference data provided in
- visualization error for regressor orthogonalization (github issue #57),
- Please download the latest stable versions of the PhysIO Toolbox on GitHub as part of the
[TAPAS software releases of the TNU](https://github.com/translationalneuromodeling/tapas/releases).
- Older versions are available on the [TNU website](http://www.translationalneuromodeling.org/tapas).
- The latest bugfixes can be found in the [GitHub Issue Forum](https://github.com/translationalneuromodeling/tapas/issues) or by request to the authors.
- The latest bugfixes can be found in the
[development branch of TAPAS](https://github.com/translationalneuromodeling/tapas/tree/development)
and are announced in the [GitHub Issue Forum](https://github.com/translationalneuromodeling/tapas/issues).
- Changes between all versions are documented in the
- External TAPAS contributors are listed in the [Contributor License Agreement](https://github.com/translationalneuromodeling/tapas/blob/master/Contributor-License-Agreement.md)
- Contributors (Examples):
- listed in [EXAMPLES.md](https://gitlab.ethz.ch/physio/physio-doc/wikis/EXAMPLES)
...
...
@@ -268,7 +269,7 @@ Requirements
- All specific software requirements and their versions are in a separate file
in this folder, `requirements.txt`.
- In brief:
- PhysIO needs Matlab to run, and some of its toolboxes.
- PhysIO needs Matlab to run, and a few of its toolboxes.
- Some functionality requires SPM (GUI, nuisance regression, contrast reporting,