Changing folder structure

source/Profiler.cpp

-/*
- *  Profiler.cpp
- *  Cubism
- *
- *  Created by Diego Rossinelli on 9/13/08.
- *  Copyright 2008 CSE Lab, ETH Zurich. All rights reserved.
- *
- */
-#include <sys/time.h>
-
-#include "Profiler.h"
-
-//#include <tbb/tick_count.h>
-//using namespace tbb;
-
-// void ProfileAgent::_getTime(ClockTime& time)
-
-
-// double ProfileAgent::_getElapsedTime(const ClockTime& tS, const ClockTime& tE)

source/Histogram.cpp → src/Histogram.cpp

+// Does anyone love me, does anyone need me? I feel so lonely...
 /*
  *  Histogram.cpp
  *

tests/common.h

@@ -25,7 +25,7 @@ using MyReal = float;
 #include <string>
 #include <sstream>
 
-#include "BlockInfo.h"
+#include <Cubism/BlockInfo.h>
 
 template <typename TReal, size_t _AOSmembers=1>
 struct Block

tests/dumpers/Makefile

@@ -8,7 +8,7 @@ nonuniform ?= no
 
 extra ?=
 
-CFLAGS = -fopenmp -g -O2 -I../../source
+CFLAGS = -fopenmp -g -O2 -I../../include
 CFLAGS+= $(extra)
 # CFLAGS += -I${HDF5_ROOT}/include
 CFLAGS+= -Wall -Wextra -Wfloat-equal -Wundef -Wcast-align

tests/dumpers/testDumpsMPI.cpp

@@ -5,25 +5,25 @@
 // Copyright 2018 ETH Zurich. All Rights Reserved.
 #include "../common.h"
 
-#include "ArgumentParser.h"
-#include "Grid.h"
-#include "GridMPI.h"
-#include "MeshMap.h"
+#include <Cubism/ArgumentParser.h>
+#include <Cubism/Grid.h>
+#include <Cubism/GridMPI.h>
+#include <Cubism/MeshMap.h>
 
 #define _USE_HDF_
-#include "HDF5Dumper.h"
-#include "HDF5Dumper_MPI.h"
+#include <Cubism/HDF5Dumper.h>
+#include <Cubism/HDF5Dumper_MPI.h>
 
-#include "HDF5SliceDumper.h"
-#include "HDF5SliceDumperMPI.h"
+#include <Cubism/HDF5SliceDumper.h>
+#include <Cubism/HDF5SliceDumperMPI.h>
 
-#include "HDF5SubdomainDumper.h"
-#include "HDF5SubdomainDumperMPI.h"
+#include <Cubism/HDF5SubdomainDumper.h>
+#include <Cubism/HDF5SubdomainDumperMPI.h>
 
 // #include "ZBinDumper.h" // requires CubismZ
 // #include "ZBinDumper_MPI.h" // requires CubismZ
 
-#include "PlainBinDumper_MPI.h"
+#include <Cubism/PlainBinDumper_MPI.h>
 
 using namespace std;
 

tests/synchronizer/Makefile

@@ -7,7 +7,7 @@ nonuniform ?= no
 
 extra ?=
 
-CFLAGS = -fopenmp -g -O2 -I../../source
+CFLAGS = -fopenmp -g -O2 -I../../include
 CFLAGS+= $(extra)
 # CFLAGS += -I${HDF5_ROOT}/include
 CFLAGS+= -Wall -Wextra -Wfloat-equal -Wundef -Wcast-align

tests/synchronizer/testSynchronizerMPI.cpp

@@ -6,13 +6,13 @@
 #include <iostream>
 
 #include "../common.h"
-#include "ArgumentParser.h"
-#include "Grid.h"
-#include "GridMPI.h"
-#include "MeshMap.h"
-#include "SynchronizerMPI.h"
-#include "StencilInfo.h"
-#include "Profiler.h"
+#include <Cubism/ArgumentParser.h>
+#include <Cubism/Grid.h>
+#include <Cubism/GridMPI.h>
+#include <Cubism/MeshMap.h>
+#include <Cubism/SynchronizerMPI.h>
+#include <Cubism/StencilInfo.h>
+#include <Cubism/Profiler.h>
 
 using namespace std;