... | ... | @@ -18,8 +18,8 @@ All necessary programs are located in the /bin directory and have a help section |
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* xtract_analyzer.pl, analyzes the extraction results and provides statistics.
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### References
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1. Walzthoeni T, Joachimiak LA, Rosenberger G, Röst HL, Malmström L, Leitner A, Frydman R, Aebersold R (2015) xTract: software for characterizing conformational changes of protein complexes by quantitative cross-linking mass spectrometry. Nature methods.
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2. Walzthoeni T, Claassen M, Leitner A, Herzog F, Bohn S, Förster F, Beck M, Aebersold R (2012) False discovery rate estimation for cross-linked peptides identified by mass spectrometry. Nature methods.
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3. Rinner O, Seebacher J, Walzthoeni T, Mueller L, Beck M, Schmidt A, Mueller M, Aebersold R (2008) Identification of cross-linked peptides from large sequence databases. Nature methods.
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4. Leitner A, Walzthoeni T, Aebersold R. (2014) Lysine-specific chemical cross-linking of protein complexes and identification of cross-linking sites using LC-MS/MS and the xQuest/xProphet software pipeline. Nature protocols.
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5. Reiter et al. (2011) mProphet: automated data processing and statistical validation for large-scale SRM experiments. Nature methods. |
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1. Walzthoeni T, Joachimiak LA, Rosenberger G, Röst HL, Malmström L, Leitner A, Frydman R, Aebersold R (2015) xTract: software for characterizing conformational changes of protein complexes by quantitative cross-linking mass spectrometry. [Nature methods.](http://dx.doi.org/10.1038/nmeth.3631)
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2. Walzthoeni T, Claassen M, Leitner A, Herzog F, Bohn S, Förster F, Beck M, Aebersold R (2012) False discovery rate estimation for cross-linked peptides identified by mass spectrometry. [Nature methods.](http://dx.doi.org/10.1038/nmeth.2103)
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3. Rinner O, Seebacher J, Walzthoeni T, Mueller L, Beck M, Schmidt A, Mueller M, Aebersold R (2008) Identification of cross-linked peptides from large sequence databases. [Nature methods.](http://www.nature.com/nmeth/journal/v5/n4/abs/nmeth.1192.html)
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4. Leitner A, Walzthoeni T, Aebersold R. (2014) Lysine-specific chemical cross-linking of protein complexes and identification of cross-linking sites using LC-MS/MS and the xQuest/xProphet software pipeline. [Nature protocols.](http://dx.doi.org/10.1038/nprot.2013.168)
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5. Reiter et al. (2011) mProphet: automated data processing and statistical validation for large-scale SRM experiments. [Nature methods.](http://dx.doi.org/10.1038/nmeth.1584) |