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Minor changes from 2.1.3: updates to make it run on new cluster at ETH; easier specification of XL amino acid combinations (i.e. K:R now means K to R and R to K)

Rectifying commit issue

Minor changes from 2.1.3: updates to make it run on new cluster at ETH; easier specification of XL amino acid combinations (i.e. K:R now means K to R and R to K)

Referenced in the "how to run" page of the website

Added a script described in the instructions on the website

This explains the Perl package dependecies (as per xQuest website)

Added files from the "Downloads" page of the xQuest website. Previously, these files were only available for download with password.