Unverified Commit d4f66d58 authored by Michal Ziemski's avatar Michal Ziemski
Browse files

Pin joblib for now

parent 1735ffc5
Pipeline #159436 passed with stages
in 20 minutes and 16 seconds
......@@ -40,7 +40,7 @@ RUN mamba create -p /opt/conda/envs/shotgun \
-c https://packages.qiime2.org/qiime2/2022.8/tested \
-c https://packages.qiime2.org/qiime2/2022.4/tested \
-c bioconda -c conda-forge -c default \
q2cli q2-assembly q2-moshpit q2-checkm q2-feature-classifier "scikit-bio<=0.5.6" ipython ipykernel kraken2 dendropy seaborn xmltodict && \
q2cli q2-assembly q2-moshpit q2-checkm q2-feature-classifier "joblib==1.1" "scikit-bio<=0.5.6" ipython ipykernel kraken2 dendropy seaborn xmltodict && \
mamba run -p /opt/conda/envs/shotgun pip install git+https://github.com/gregcaporaso/q2-sapienns.git git+https://github.com/misialq/q2-moshpit.git@kraken && \
mamba run -p /opt/conda/envs/shotgun ipython kernel install --name=shotgun --display-name="QIIME2 (shotgun)" && \
mamba run -p /opt/conda/envs/shotgun qiime dev refresh-cache
......
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