Unverified Commit 1689e237 authored by Michal Ziemski's avatar Michal Ziemski
Browse files

Add some neat JLab extensions

Took 11 minutes
parent b4858860
Pipeline #137984 passed with stages
in 17 minutes and 57 seconds
......@@ -15,9 +15,13 @@ RUN apt-get update && apt-get upgrade -y && apt-get install -y zip
COPY qiime2-2022.2-py38-linux-conda.yml .
RUN mamba env update -n base --file qiime2-2022.2-py38-linux-conda.yml
RUN rm qiime2-2022.2-py38-linux-conda.yml
RUN qiime dev refresh-cache
# This could later be combined with the step below?
RUN mamba install -c conda-forge jupyterlab-system-monitor jupyterlab-git
# Our standard notebook gets this. Remove if you encounter conflicts or other issues
# Removing scikit-learn, keras as they will be installed below. Also, moving this
# Removing scikit-learn, keras as they were installed above. Also, moving this
# step to the end as otherwise mamba fails to resolve some deps.
RUN mamba install uncertainties nbgrader pylatex biopython ete3 nbgitpuller
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