From 650926fab309da5e38572f8492e50b8b070a3340 Mon Sep 17 00:00:00 2001 From: dmar Date: Thu, 28 Mar 2019 23:22:07 +0100 Subject: [PATCH] add visualization file for vmd --- Exercises/Exercise-6/vmd_visualization | 632 +++++++++++++++++++++++++ 1 file changed, 632 insertions(+) create mode 100644 Exercises/Exercise-6/vmd_visualization diff --git a/Exercises/Exercise-6/vmd_visualization b/Exercises/Exercise-6/vmd_visualization new file mode 100644 index 0000000..5e48c26 --- /dev/null +++ b/Exercises/Exercise-6/vmd_visualization @@ -0,0 +1,632 @@ +#!/usr/local/bin/vmd +# VMD script written by save_state $Revision: 1.47 $ +# VMD version: 1.9.3 +set viewplist {} +set fixedlist {} +proc vmdrestoremymaterials {} { + set mlist { Opaque Transparent BrushedMetal Diffuse Ghost Glass1 Glass2 Glass3 Glossy HardPlastic MetallicPastel Steel Translucent Edgy EdgyShiny EdgyGlass Goodsell AOShiny AOChalky AOEdgy BlownGlass GlassBubble RTChrome } + set mymlist [material list] + foreach mat $mlist { + if { [lsearch $mymlist $mat] == -1 } { + material add $mat + } + } + material change ambient Opaque 0.000000 + material change diffuse Opaque 0.650000 + material change specular Opaque 0.500000 + material change shininess Opaque 0.534020 + material change mirror Opaque 0.000000 + material change opacity Opaque 1.000000 + material change outline Opaque 0.000000 + material change outlinewidth Opaque 0.000000 + material change transmode Opaque 0.000000 + material change ambient Transparent 0.000000 + material change diffuse Transparent 0.650000 + material change specular Transparent 0.500000 + material change shininess Transparent 0.534020 + material change mirror Transparent 0.000000 + material change opacity Transparent 0.300000 + material change outline Transparent 0.000000 + material change outlinewidth Transparent 0.000000 + material change transmode Transparent 0.000000 + material change ambient BrushedMetal 0.080000 + material change diffuse BrushedMetal 0.390000 + material change specular BrushedMetal 0.340000 + material change shininess BrushedMetal 0.150000 + material change mirror BrushedMetal 0.000000 + material change opacity BrushedMetal 1.000000 + material change outline BrushedMetal 0.000000 + material change outlinewidth BrushedMetal 0.000000 + material change transmode BrushedMetal 0.000000 + material change ambient Diffuse 0.000000 + material change diffuse Diffuse 0.620000 + material change specular Diffuse 0.000000 + material change shininess Diffuse 0.530000 + material change mirror Diffuse 0.000000 + material change opacity Diffuse 1.000000 + material change outline Diffuse 0.000000 + material change outlinewidth Diffuse 0.000000 + material change transmode Diffuse 0.000000 + material change ambient Ghost 0.000000 + material change diffuse Ghost 0.000000 + material change specular Ghost 1.000000 + material change shininess Ghost 0.230000 + material change mirror Ghost 0.000000 + material change opacity Ghost 0.100000 + material change outline Ghost 0.000000 + material change outlinewidth Ghost 0.000000 + material change transmode Ghost 0.000000 + material change ambient Glass1 0.000000 + material change diffuse Glass1 0.500000 + material change specular Glass1 0.650000 + material change shininess Glass1 0.530000 + material change mirror Glass1 0.000000 + material change opacity Glass1 0.150000 + material change outline Glass1 0.000000 + material change outlinewidth Glass1 0.000000 + material change transmode Glass1 0.000000 + material change ambient Glass2 0.520000 + material change diffuse Glass2 0.760000 + material change specular Glass2 0.220000 + material change shininess Glass2 0.590000 + material change mirror Glass2 0.000000 + material change opacity Glass2 0.680000 + material change outline Glass2 0.000000 + material change outlinewidth Glass2 0.000000 + material change transmode Glass2 0.000000 + material change ambient Glass3 0.150000 + material change diffuse Glass3 0.250000 + material change specular Glass3 0.750000 + material change shininess Glass3 0.800000 + material change mirror Glass3 0.000000 + material change opacity Glass3 0.500000 + material change outline Glass3 0.000000 + material change outlinewidth Glass3 0.000000 + material change transmode Glass3 0.000000 + material change ambient Glossy 0.000000 + material change diffuse Glossy 0.650000 + material change specular Glossy 1.000000 + material change shininess Glossy 0.880000 + material change mirror Glossy 0.000000 + material change opacity Glossy 1.000000 + material change outline Glossy 0.000000 + material change outlinewidth Glossy 0.000000 + material change transmode Glossy 0.000000 + material change ambient HardPlastic 0.000000 + material change diffuse HardPlastic 0.560000 + material change specular HardPlastic 0.280000 + material change shininess HardPlastic 0.690000 + material change mirror HardPlastic 0.000000 + material change opacity HardPlastic 1.000000 + material change outline HardPlastic 0.000000 + material change outlinewidth HardPlastic 0.000000 + material change transmode HardPlastic 0.000000 + material change ambient MetallicPastel 0.000000 + material change diffuse MetallicPastel 0.260000 + material change specular MetallicPastel 0.550000 + material change shininess MetallicPastel 0.190000 + material change mirror MetallicPastel 0.000000 + material change opacity MetallicPastel 1.000000 + material change outline MetallicPastel 0.000000 + material change outlinewidth MetallicPastel 0.000000 + material change transmode MetallicPastel 0.000000 + material change ambient Steel 0.250000 + material change diffuse Steel 0.000000 + material change specular Steel 0.380000 + material change shininess Steel 0.320000 + material change mirror Steel 0.000000 + material change opacity Steel 1.000000 + material change outline Steel 0.000000 + material change outlinewidth Steel 0.000000 + material change transmode Steel 0.000000 + material change ambient Translucent 0.000000 + material change diffuse Translucent 0.700000 + material change specular Translucent 0.600000 + material change shininess Translucent 0.300000 + material change mirror Translucent 0.000000 + material change opacity Translucent 0.800000 + material change outline Translucent 0.000000 + material change outlinewidth Translucent 0.000000 + material change transmode Translucent 0.000000 + material change ambient Edgy 0.000000 + material change diffuse Edgy 0.660000 + material change specular Edgy 0.000000 + material change shininess Edgy 0.750000 + material change mirror Edgy 0.000000 + material change opacity Edgy 1.000000 + material change outline Edgy 0.620000 + material change outlinewidth Edgy 0.940000 + material change transmode Edgy 0.000000 + material change ambient EdgyShiny 0.000000 + material change diffuse EdgyShiny 0.660000 + material change specular EdgyShiny 0.960000 + material change shininess EdgyShiny 0.750000 + material change mirror EdgyShiny 0.000000 + material change opacity EdgyShiny 1.000000 + material change outline EdgyShiny 0.760000 + material change outlinewidth EdgyShiny 0.940000 + material change transmode EdgyShiny 0.000000 + material change ambient EdgyGlass 0.000000 + material change diffuse EdgyGlass 0.660000 + material change specular EdgyGlass 0.500000 + material change shininess EdgyGlass 0.750000 + material change mirror EdgyGlass 0.000000 + material change opacity EdgyGlass 0.620000 + material change outline EdgyGlass 0.620000 + material change outlinewidth EdgyGlass 0.940000 + material change transmode EdgyGlass 0.000000 + material change ambient Goodsell 0.520000 + material change diffuse Goodsell 1.000000 + material change specular Goodsell 0.000000 + material change shininess Goodsell 0.000000 + material change mirror Goodsell 0.000000 + material change opacity Goodsell 1.000000 + material change outline Goodsell 4.000000 + material change outlinewidth Goodsell 0.900000 + material change transmode Goodsell 0.000000 + material change ambient AOShiny 0.000000 + material change diffuse AOShiny 0.850000 + material change specular AOShiny 0.200000 + material change shininess AOShiny 0.530000 + material change mirror AOShiny 0.000000 + material change opacity AOShiny 1.000000 + material change outline AOShiny 0.000000 + material change outlinewidth AOShiny 0.000000 + material change transmode AOShiny 0.000000 + material change ambient AOChalky 0.000000 + material change diffuse AOChalky 0.850000 + material change specular AOChalky 0.000000 + material change shininess AOChalky 0.530000 + material change mirror AOChalky 0.000000 + material change opacity AOChalky 1.000000 + material change outline AOChalky 0.000000 + material change outlinewidth AOChalky 0.000000 + material change transmode AOChalky 0.000000 + material change ambient AOEdgy 0.000000 + material change diffuse AOEdgy 0.900000 + material change specular AOEdgy 0.200000 + material change shininess AOEdgy 0.530000 + material change mirror AOEdgy 0.000000 + material change opacity AOEdgy 1.000000 + material change outline AOEdgy 0.620000 + material change outlinewidth AOEdgy 0.930000 + material change transmode AOEdgy 0.000000 + material change ambient BlownGlass 0.040000 + material change diffuse BlownGlass 0.340000 + material change specular BlownGlass 1.000000 + material change shininess BlownGlass 1.000000 + material change mirror BlownGlass 0.000000 + material change opacity BlownGlass 0.100000 + material change outline BlownGlass 0.000000 + material change outlinewidth BlownGlass 0.000000 + material change transmode BlownGlass 1.000000 + material change ambient GlassBubble 0.250000 + material change diffuse GlassBubble 0.340000 + material change specular GlassBubble 1.000000 + material change shininess GlassBubble 1.000000 + material change mirror GlassBubble 0.000000 + material change opacity GlassBubble 0.040000 + material change outline GlassBubble 0.000000 + material change outlinewidth GlassBubble 0.000000 + material change transmode GlassBubble 1.000000 + material change ambient RTChrome 0.000000 + material change diffuse RTChrome 0.650000 + material change specular RTChrome 0.500000 + material change shininess RTChrome 0.530000 + material change mirror RTChrome 0.700000 + material change opacity RTChrome 1.000000 + material change outline RTChrome 0.000000 + material change outlinewidth RTChrome 0.000000 + material change transmode RTChrome 0.000000 +} +vmdrestoremymaterials +# Atom selection macros +atomselect macro at {resname ADE A THY T +} +atomselect macro acidic {resname ASP GLU +} +atomselect macro cyclic {resname HIS PHE PRO TRP TYR +} +atomselect macro acyclic {protein and not cyclic +} +atomselect macro aliphatic {resname ALA GLY ILE LEU VAL +} +atomselect macro alpha {protein and name CA +} +atomselect macro amino {protein +} +atomselect macro aromatic {resname HIS PHE TRP TYR +} +atomselect macro basic {resname ARG HIS LYS HSP +} +atomselect macro bonded {numbonds > 0 +} +atomselect macro buried {resname ALA LEU VAL ILE PHE CYS MET TRP +} +atomselect macro cg {resname CYT C GUA G +} +atomselect macro charged {basic or acidic +} +atomselect macro hetero {not (protein or nucleic) +} +atomselect macro hydrophobic {resname ALA LEU VAL ILE PRO PHE MET TRP +} +atomselect macro small {resname ALA GLY SER +} +atomselect macro medium {resname VAL THR ASP ASN PRO CYS ASX PCA HYP +} +atomselect macro large {protein and not (small or medium) +} +atomselect macro neutral {resname VAL PHE GLN TYR HIS CYS MET TRP ASX GLX PCA HYP +} +atomselect macro polar {protein and not hydrophobic +} +atomselect macro purine {resname ADE A GUA G +} +atomselect macro pyrimidine {resname CYT C THY T URA U +} +atomselect macro surface {protein and not buried +} +atomselect macro lipid {resname DLPE DMPC DPPC GPC LPPC PALM PC PGCL POPC POPE +} +atomselect macro lipids {lipid +} +atomselect macro ion {resname AL BA CA CAL CD CES CLA CL CO CS CU CU1 CUA HG IN IOD K LIT MG MN3 MO3 MO4 MO5 MO6 NA NAW OC7 PB POT PT RB SOD TB TL WO4 YB ZN ZN1 ZN2 +} +atomselect macro ions {ion +} +atomselect macro sugar {resname AGLC +} +atomselect macro solvent {not (protein or sugar or nucleic or lipid) +} +atomselect macro glycan {resname NAG BGLN FUC AFUC MAN AMAN BMA BMAN +} +atomselect macro carbon {name "C.*" and not ion +} +atomselect macro hydrogen {name "[0-9]?H.*" +} +atomselect macro nitrogen {name "N.*" +} +atomselect macro oxygen {name "O.*" +} +atomselect macro sulfur {name "S.*" and not ion +} +atomselect macro noh {not hydrogen +} +atomselect macro heme {resname HEM HEME +} +atomselect macro conformationall {altloc "" +} +atomselect macro conformationA {altloc "" or altloc "A" +} +atomselect macro conformationB {altloc "" or altloc "B" +} +atomselect macro conformationC {altloc "" or altloc "C" +} +atomselect macro conformationD {altloc "" or altloc "D" +} +atomselect macro conformationE {altloc "" or altloc "E" +} +atomselect macro conformationF {altloc "" or altloc "F" +} +atomselect macro drude {type DRUD or type LP +} +atomselect macro unparametrized beta<1 +atomselect macro addedmolefacture {occupancy 0.8} +atomselect macro qwikmd_protein {(not name QWIKMDDELETE and protein)} +atomselect macro qwikmd_nucleic {(not name QWIKMDDELETE and nucleic)} +atomselect macro qwikmd_glycan {(not name QWIKMDDELETE and glycan)} +atomselect macro qwikmd_lipid {(not name QWIKMDDELETE and lipid)} +atomselect macro qwikmd_hetero {(not name QWIKMDDELETE and hetero and not qwikmd_protein and not qwikmd_lipid and not qwikmd_nucleic and not qwikmd_glycan and not water)} +# Display settings +display eyesep 0.065000 +display focallength 2.000000 +display height 6.000000 +display distance -2.000000 +display projection Orthographic +display nearclip set 0.500000 +display farclip set 10.000000 +display depthcue on +display cuestart 0.500000 +display cueend 10.000000 +display cuestart 0.500000 +display cueend 10.000000 +display cuedensity 0.320000 +display cuemode Exp2 +display shadows off +display ambientocclusion off +display aoambient 0.800000 +display aodirect 0.300000 +display dof off +display dof_fnumber 64.000000 +display dof_focaldist 0.700000 +mol delrep 0 top +mol representation CPK 1.000000 0.300000 12.000000 12.000000 +mol color ColorID 6 +mol selection {all} +mol material Opaque +mol addrep top +#mol selupdate 0 top 0 +#mol colupdate 0 top 0 +#mol scaleminmax top 0 0.000000 0.000000 +#mol smoothrep top 0 0 +#mol drawframes top 0 {now} +#mol clipplane center 0 0 top {0.0 0.0 0.0} +mol clipplane color 0 0 top {0.5 0.5 0.5 } +mol clipplane normal 0 0 top {0.0 0.0 1.0} +mol clipplane status 0 0 top {0} +#mol clipplane center 1 0 top {0.0 0.0 0.0} +mol clipplane color 1 0 top {0.5 0.5 0.5 } +mol clipplane normal 1 0 top {0.0 0.0 1.0} +mol clipplane status 1 0 top {0} +#mol clipplane center 2 0 top {0.0 0.0 0.0} +mol clipplane color 2 0 top {0.5 0.5 0.5 } +mol clipplane normal 2 0 top {0.0 0.0 1.0} +mol clipplane status 2 0 top {0} +#mol clipplane center 3 0 top {0.0 0.0 0.0} +mol clipplane color 3 0 top {0.5 0.5 0.5 } +mol clipplane normal 3 0 top {0.0 0.0 1.0} +mol clipplane status 3 0 top {0} +#mol clipplane center 4 0 top {0.0 0.0 0.0} +mol clipplane color 4 0 top {0.5 0.5 0.5 } +mol clipplane normal 4 0 top {0.0 0.0 1.0} +mol clipplane status 4 0 top {0} +#mol clipplane center 5 0 top {0.0 0.0 0.0} +mol clipplane color 5 0 top {0.5 0.5 0.5 } +mol clipplane normal 5 0 top {0.0 0.0 1.0} +mol clipplane status 5 0 top {0} +mol representation Isosurface 0.050000 0 0 1 1 2 +mol color ColorID 30 +mol selection {all} +mol material Opaque +mol addrep top +mol selupdate 1 top 0 +mol colupdate 1 top 0 +mol scaleminmax top 1 0.000000 0.000000 +mol smoothrep top 1 0 +mol drawframes top 1 {now} +#mol clipplane center 0 1 top {0.0 0.0 0.0} +mol clipplane color 0 1 top {0.5 0.5 0.5 } +mol clipplane normal 0 1 top {0.0 0.0 1.0} +mol clipplane status 0 1 top {0} +#mol clipplane center 1 1 top {0.0 0.0 0.0} +mol clipplane color 1 1 top {0.5 0.5 0.5 } +mol clipplane normal 1 1 top {0.0 0.0 1.0} +mol clipplane status 1 1 top {0} +#mol clipplane center 2 1 top {0.0 0.0 0.0} +mol clipplane color 2 1 top {0.5 0.5 0.5 } +mol clipplane normal 2 1 top {0.0 0.0 1.0} +mol clipplane status 2 1 top {0} +#mol clipplane center 3 1 top {0.0 0.0 0.0} +mol clipplane color 3 1 top {0.5 0.5 0.5 } +mol clipplane normal 3 1 top {0.0 0.0 1.0} +mol clipplane status 3 1 top {0} +#mol clipplane center 4 1 top {0.0 0.0 0.0} +mol clipplane color 4 1 top {0.5 0.5 0.5 } +mol clipplane normal 4 1 top {0.0 0.0 1.0} +mol clipplane status 4 1 top {0} +#mol clipplane center 5 1 top {0.0 0.0 0.0} +mol clipplane color 5 1 top {0.5 0.5 0.5 } +mol clipplane normal 5 1 top {0.0 0.0 1.0} +mol clipplane status 5 1 top {0} +mol representation Isosurface -0.050000 0 0 1 1 2 +mol color ColorID 23 +mol selection {all} +mol material Opaque +mol addrep top +mol selupdate 2 top 0 +mol colupdate 2 top 0 +mol scaleminmax top 2 0.000000 0.000000 +mol smoothrep top 2 0 +mol drawframes top 2 {now} +#mol clipplane center 0 2 top {0.0 0.0 0.0} +mol clipplane color 0 2 top {0.5 0.5 0.5 } +mol clipplane normal 0 2 top {0.0 0.0 1.0} +mol clipplane status 0 2 top {0} +#mol clipplane center 1 2 top {0.0 0.0 0.0} +mol clipplane color 1 2 top {0.5 0.5 0.5 } +mol clipplane normal 1 2 top {0.0 0.0 1.0} +mol clipplane status 1 2 top {0} +#mol clipplane center 2 2 top {0.0 0.0 0.0} +mol clipplane color 2 2 top {0.5 0.5 0.5 } +mol clipplane normal 2 2 top {0.0 0.0 1.0} +mol clipplane status 2 2 top {0} +#mol clipplane center 3 2 top {0.0 0.0 0.0} +mol clipplane color 3 2 top {0.5 0.5 0.5 } +mol clipplane normal 3 2 top {0.0 0.0 1.0} +mol clipplane status 3 2 top {0} +#mol clipplane center 4 2 top {0.0 0.0 0.0} +mol clipplane color 4 2 top {0.5 0.5 0.5 } +mol clipplane normal 4 2 top {0.0 0.0 1.0} +mol clipplane status 4 2 top {0} +#mol clipplane center 5 2 top {0.0 0.0 0.0} +mol clipplane color 5 2 top {0.5 0.5 0.5 } +mol clipplane normal 5 2 top {0.0 0.0 1.0} +mol clipplane status 5 2 top {0} +#set viewpoints([molinfo top]) {{{1 0 0 -5} {0 1 0 -5} {0 0 1 -5} {0 0 0 1}} {{0.995439 0.0945445 -0.0111463 0} {-0.0874186 0.954146 0.286192 0} {0.0376939 -0.283915 0.958082 0} {0 0 0 1}} {{0.419664 0 0 0} {0 0.419664 0 0} {0 0 0.419664 0} {0 0 0 1}} {{1 0 0 0} {0 1 0 0} {0 0 1 0} {0 0 0 1}}} +lappend viewplist [molinfo top] +set topmol [molinfo top] +# done with molecule 0 +foreach v $viewplist { + molinfo $v set {center_matrix rotate_matrix scale_matrix global_matrix} $viewpoints($v) +} +foreach v $fixedlist { + molinfo $v set fixed 1 +} +unset viewplist +unset fixedlist +mol top $topmol +unset topmol +proc vmdrestoremycolors {} { +color scale colors RWB {1.0 0.0 0.0} {1.0 1.0 1.0} {0.0 0.0 1.0} +color scale colors BWR {0.0 0.0 1.0} {1.0 1.0 1.0} {1.0 0.0 0.0} +color scale colors RGryB {1.0 0.0 0.0} {0.5 0.5 0.5} {0.0 0.0 1.0} +color scale colors BGryR {0.0 0.0 1.0} {0.5 0.5 0.5} {1.0 0.0 0.0} +color scale colors RGB {1.0 0.0 0.0} {0.0 1.0 0.0} {0.0 0.0 1.0} +color scale colors BGR {0.0 0.0 1.0} {0.0 1.0 0.0} {1.0 0.0 0.0} +color scale colors RWG {1.0 0.0 0.0} {1.0 1.0 1.0} {0.0 1.0 0.0} +color scale colors GWR {0.0 1.0 0.0} {1.0 1.0 1.0} {1.0 0.0 0.0} +color scale colors GWB {0.0 1.0 0.0} {1.0 1.0 1.0} {0.0 0.0 1.0} +color scale colors BWG {0.0 0.0 1.0} {1.0 1.0 1.0} {0.0 1.0 0.0} +color scale colors BlkW {0.0 0.0 0.0} {0.5 0.5 0.5} {1.0 1.0 1.0} +color scale colors WBlk {1.0 1.0 1.0} {0.5 0.5 0.5} {0.0 0.0 0.0} + color scale method RWB + set colorcmds { + {color Display {BackgroundTop} black} + {color Display {BackgroundBot} blue2} + {color Display {FPS} white} + {color Name {LPA} green} + {color Name {LPB} green} + {color Type {LP} green} + {color Type {DRUD} pink} + {color Element {X} cyan} + {color Element {Ac} ochre} + {color Element {Ag} ochre} + {color Element {Al} ochre} + {color Element {Am} ochre} + {color Element {Ar} ochre} + {color Element {As} ochre} + {color Element {At} ochre} + {color Element {Au} ochre} + {color Element {B} ochre} + {color Element {Ba} ochre} + {color Element {Be} ochre} + {color Element {Bh} ochre} + {color Element {Bi} ochre} + {color Element {Bk} ochre} + {color Element {Br} ochre} + {color Element {Ca} ochre} + {color Element {Cd} ochre} + {color Element {Ce} ochre} + {color Element {Cf} ochre} + {color Element {Cl} ochre} + {color Element {Cm} ochre} + {color Element {Co} ochre} + {color Element {Cr} ochre} + {color Element {Cs} ochre} + {color Element {Cu} ochre} + {color Element {Db} ochre} + {color Element {Ds} ochre} + {color Element {Dy} ochre} + {color Element {Er} ochre} + {color Element {Es} ochre} + {color Element {Eu} ochre} + {color Element {F} ochre} + {color Element {Fe} ochre} + {color Element {Fm} ochre} + {color Element {Fr} ochre} + {color Element {Ga} ochre} + {color Element {Gd} ochre} + {color Element {Ge} ochre} + {color Element {He} ochre} + {color Element {Hf} ochre} + {color Element {Hg} ochre} + {color Element {Ho} ochre} + {color Element {Hs} ochre} + {color Element {I} ochre} + {color Element {In} ochre} + {color Element {Ir} ochre} + {color Element {K} ochre} + {color Element {Kr} ochre} + {color Element {La} ochre} + {color Element {Li} ochre} + {color Element {Lr} ochre} + {color Element {Lu} ochre} + {color Element {Md} ochre} + {color Element {Mg} ochre} + {color Element {Mn} ochre} + {color Element {Mo} ochre} + {color Element {Mt} ochre} + {color Element {Na} ochre} + {color Element {Nb} ochre} + {color Element {Nd} ochre} + {color Element {Ne} ochre} + {color Element {Ni} ochre} + {color Element {No} ochre} + {color Element {Np} ochre} + {color Element {Os} ochre} + {color Element {Pa} ochre} + {color Element {Pb} ochre} + {color Element {Pd} ochre} + {color Element {Pm} ochre} + {color Element {Po} ochre} + {color Element {Pr} ochre} + {color Element {Pt} ochre} + {color Element {Pu} ochre} + {color Element {Ra} ochre} + {color Element {Rb} ochre} + {color Element {Re} ochre} + {color Element {Rf} ochre} + {color Element {Rg} ochre} + {color Element {Rh} ochre} + {color Element {Rn} ochre} + {color Element {Ru} ochre} + {color Element {Sb} ochre} + {color Element {Sc} ochre} + {color Element {Se} ochre} + {color Element {Sg} ochre} + {color Element {Si} ochre} + {color Element {Sm} ochre} + {color Element {Sn} ochre} + {color Element {Sr} ochre} + {color Element {Ta} ochre} + {color Element {Tb} ochre} + {color Element {Tc} ochre} + {color Element {Te} ochre} + {color Element {Th} ochre} + {color Element {Ti} ochre} + {color Element {Tl} ochre} + {color Element {Tm} ochre} + {color Element {U} ochre} + {color Element {V} ochre} + {color Element {W} ochre} + {color Element {Xe} ochre} + {color Element {Y} ochre} + {color Element {Yb} ochre} + {color Element {Zr} ochre} + {color Resname {} silver} + {color Chain {X} blue} + {color Segname {} blue} + {color Conformation {all} blue} + {color Molecule {0} blue} + {color Structure {3_10_Helix} blue} + {color Surface {Grasp} gray} + {color Labels {Springs} orange} + {color Stage {Even} gray} + {color Stage {Odd} silver} + } + foreach colcmd $colorcmds { + set val [catch {eval $colcmd}] + } + color change rgb 0 0.0 0.0 1.0 + color change rgb 2 0.3499999940395355 0.3499999940395355 0.3499999940395355 + color change rgb 3 1.0 0.5 0.0 + color change rgb 4 1.0 1.0 0.0 + color change rgb 5 0.5 0.5 0.20000000298023224 + color change rgb 6 0.6000000238418579 0.6000000238418579 0.6000000238418579 + color change rgb 7 0.0 1.0 0.0 + color change rgb 9 1.0 0.6000000238418579 0.6000000238418579 + color change rgb 11 0.6499999761581421 0.0 0.6499999761581421 + color change rgb 12 0.5 0.8999999761581421 0.4000000059604645 + color change rgb 13 0.8999999761581421 0.4000000059604645 0.699999988079071 + color change rgb 14 0.5 0.30000001192092896 0.0 + color change rgb 15 0.5 0.5 0.75 + color change rgb 17 0.8799999952316284 0.9700000286102295 0.019999999552965164 + color change rgb 18 0.550000011920929 0.8999999761581421 0.019999999552965164 + color change rgb 19 0.0 0.8999999761581421 0.03999999910593033 + color change rgb 20 0.0 0.8999999761581421 0.5 + color change rgb 21 0.0 0.8799999952316284 1.0 + color change rgb 22 0.0 0.7599999904632568 1.0 + color change rgb 23 0.019999999552965164 0.3799999952316284 0.6700000166893005 + color change rgb 24 0.009999999776482582 0.03999999910593033 0.9300000071525574 + color change rgb 25 0.27000001072883606 0.0 0.9800000190734863 + color change rgb 26 0.44999998807907104 0.0 0.8999999761581421 + color change rgb 27 0.8999999761581421 0.0 0.8999999761581421 + color change rgb 28 1.0 0.0 0.6600000262260437 + color change rgb 29 0.9800000190734863 0.0 0.23000000417232513 + color change rgb 30 0.8100000023841858 0.0 0.0 + color change rgb 31 0.8899999856948853 0.3499999940395355 0.0 + color change rgb 32 0.9599999785423279 0.7200000286102295 0.0 +} +vmdrestoremycolors +label textsize 1.0 -- GitLab