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Code examples and Jupyter-notebooks for the course Infectious Disease Dynamics, mainly in Julia.

This repository contains code to analyze LiP-MS data in the context of protein structures. It requires that you have analyzed your MS data before, and that you have a csv file with at least UniProt IDs, peptide sequences and pvalues.

This repository contains the data and analysis-, evaluation- and plotting scripts.

From a 'root' Wikipedia article, a tree is constructed, where the child nodes are random subset of the articles linked in the parent node article. Used to generate datasets of varying size and similarity to the root article for NLG models.

News classification neural network model to classify a hierarchical news dataset. Algorithm to detect class overlap and similarities.