diff --git a/Dockerfile b/Dockerfile
index 8824570b29f811250c8c5e69b7519a35b103e1be..1ac2855cc51e02aae96c58e4c68322c9a80d8622 100644
--- a/Dockerfile
+++ b/Dockerfile
@@ -97,6 +97,7 @@ RUN conda config --set default_threads 4 && \
   plotly \
   py3dmol \
   pylatex \
+  pymatgen \
   pymrio \
   pyteomics \
   pytesseract \
@@ -104,6 +105,7 @@ RUN conda config --set default_threads 4 && \
   pyvista \
   rdkit \
   sinfo \
+  scanpy \
   scikit-image \
   scikit-learn \
   seaborn \
@@ -178,11 +180,8 @@ RUN PIP_PROXY=http://proxy.ethz.ch:3128 pip3 install --proxy=http://proxy.ethz.c
   pycosmo \
   pycryptodome \
   pyFAI \
-  pymatgen \
-  pymrio \
   pypardiso \
   rise \
-  scanpy \
   sensemapi \
   summa \
   tensorflow \