diff --git a/Dockerfile b/Dockerfile index 44fbdacf54267551d57bf2a6fc19faa311eb8ad4..b680b17dac943bf877b2cd907ccbbf7971d561cf 100644 --- a/Dockerfile +++ b/Dockerfile @@ -71,6 +71,7 @@ RUN Rscript >/dev/null 2>&1 -e "install.packages(pkgs=c( \ RUN conda config --set default_threads 4 && \ mamba install -q -c defaults -c conda-forge -c bioconda -c bokeh \ arviz \ + autogluon \ biopython \ bokeh \ boost-histogram \ @@ -100,6 +101,7 @@ RUN conda config --set default_threads 4 && \ pyteomics \ pytesseract \ pyspellchecker \ + pyvista \ rdkit \ sinfo \ scanpy \ @@ -125,13 +127,11 @@ RUN conda config --set default_threads 4 && \ r-lpsolve \ r-lhs \ r-rsolnp \ - autogluon \ && \ mamba install -c python-control control \ && \ mamba clean --all - # pyvista \ # root \ # breaks sqlite3, hub fails to start ##################