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© Lukas Roth, Group of crop science, ETH Zurich

# HTFP data processing I:
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Based on manuscript:

Roth et al. 2021 - Phenomics data processing: A plot-level model for repeated measurements to extract the timing of key stages and quantities at defined time points
(https://doi.org/10.1101/2021.05.02.442243) 

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## Demo

For a running minimal example see:
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[1_Pspline_QMER_SpATS_asreml.R](Demo/1_Pspline_QMER_SpATS_asreml.R)
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![](Graphs/1_Splines.png)
![](Graphs/1_QMER.png)
![](Graphs/1_BLUEs.png)

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## Stage 1

P-spline and QMER method functions:
```R/Model/Spline_QMER.R```

## Stage 2
SpATS functions:
```R/Model/FitSpATS.R```

## Stage 3
asreml-R functions:
```R/Model/FitREML.R```

# HTFP data processing II:

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Based on manuscript:

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Roth, L., Rodríguez-Álvarez, M. X., van Eeuwijk, F., Piepho, H.-P. & Hund, A. Phenomics data processing: A plot-level model for repeated measurements to extract the timing of key stages and quantities at defined time points. F. Crop. Res. 274, (2021).
(https://doi.org/10.1016/j.fcr.2021.108314) 
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## Dose-Respone curve extraction
```R/Model/Dose_response.R```