v3.2 , updated consistently the package so that mutations can, if mu[i] =...

v3.2 , updated consistently the package so that mutations can, if mu[i] = ndmis(space[i]) happen on every component of the high dimensional space. This is done in a performant way that has been benmarked.

Project.toml

 name = "ABMEv"
 uuid = "837ac870-fb52-4b0c-9a0e-030f2f36f5ed"
 authors = ["Victor Boussange "]
-version = "3.1.0"
+version = "3.2.0"
 
 [deps]
 Arpack = "7d9fca2a-8960-54d3-9f78-7d1dccf2cb97"

test/dyn_land.jl

@@ -36,7 +36,7 @@ mu = [.1]
 NMax = 10000
 tend = 1.5
 p = Dict{String,Any}();@pack! p = D,mu,NMax
-myagents = [Agent(myspace,(1,),ancestors=true,rates=true) for i in 1:K0]
+myagents = [Agent(myspace,[1],ancestors=true,rates=true) for i in 1:K0]
 w0 = World(myagents,myspace,p,0.)
 w1 = copy(w0)
 @info "Running simulation with Gillepsie algorithm"

test/metrics_hamming.jl

@@ -18,7 +18,7 @@ NMax = 10000
 tend = 1.5
 p = Dict{String,Any}();@pack! p = D,mu,NMax
 
-myagents = [Agent(myspace,(0,),ancestors=true,rates=true) for i in 1:K0]
+myagents = [Agent(myspace,[0.,],ancestors=true,rates=true) for i in 1:K0]
 w0 = World(myagents,myspace,p,0.)
 @info "Running simulation with Gillepsie algorithm"
 @time sim = run!(w0,Gillepsie(),tend,b,d)

test/simulation.jl

@@ -57,8 +57,8 @@ cb(w) = Dict("gamma_div" => w -> var(Float64.(get_x(w,1))))
 myagents = [Agent(myspace,[0.],ancestors=true,rates=true) for i in 1:K0]
 w0 = World(myagents,myspace,p,0.)
 w1 = copy(w0)
-cb = (names = ["gamma_div"], agg = Function[w -> var(Float64.(get_x(w,1)))])
-eltype(cb.agg)
+cb(w) = Dict("gamma_div" => var(Float64.(get_x(w,1))))
+# eltype(cb.agg)
 @time sim = run!(w1,Gillepsie(),tend,b,d,cb=cb,t_saving_cb = collect(1.0:0.1:1.5))
 @test typeof(sim["gamma_div"]) <: Vector
 @test get_size(sim) == length(sim["gamma_div"])
@@ -68,5 +68,5 @@ eltype(cb.agg)
 
 
 ## testing plot
-using Plots
-plot(get_tspan(sim),sim["gamma_div"])
+# using Plots
+# plot(get_tspan(sim),sim["gamma_div"])

test/space_agent.jl

@@ -71,11 +71,11 @@ a5 = Agent(myspace2,ancestors=true)
 
     # increment test
     p_myspace = Dict("D"=>[1,1,1],"mu" =>[1,1,1] )
-    p_myspace2 = Dict("D"=>[1,1,1],"mu" =>[1,1,1])
+    p_myspace2 = Dict("D"=>[1,1,[1,1]],"mu" =>[1,1,[1,1]])
     old_a1 = copy(a1)
     @test !prod((get_x(old_a1) .≈ get_x(increment_x!(a1,myspace,p_myspace,0.))))
     @test nancestors(increment_x!(a2,myspace,p_myspace,2.)) > 1
     @test !isnothing(increment_x!(a4,myspace2,p_myspace2,2.))
     @test !isnothing(increment_x!(a5,myspace2,p_myspace2,2.))
-    @test typeof(ABMEv._get_xinc(a2,myspace,p,0.)) == typeof(get_x(a2))
+    @test typeof(ABMEv._get_xinc(a2,myspace,p_myspace,0.)) == typeof(get_x(a2))
 end