EvoId.jl 1.51 KB
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module EvoId
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    using Distributions,LinearAlgebra,Reexport,StatsBase
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    using UnPack
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    using DocStringExtensions
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    using Arpack
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    include("Space.jl")
    include("Agent.jl")
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    include("World.jl")
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    include("Sim.jl")
    include("metrics.jl")
    include("plot.jl")
    include("utils.jl")
    include("algo/WF.jl")
    include("algo/Gillepsie.jl")
    include("algo/CFM.jl")
    include("runworld.jl")
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    @reexport using Distributions, DataFrames, LightGraphs
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    export

    GraphSpace,ContinuousSegment,DiscreteSegment,RealSpace,NaturalSpace,
    AbstractSpacesTuple,get_inc,DynGraphSpace,

    update_rates!,

    AbstractAgent,Agent,get_fitness,get_x,get_t,get_dim,
    nancestors,get_xarray,get_xhist,
    get_thist,get_geo,get_b,get_d,increment_x!,get_inc_reflected,world2df,
    split_move,split_merge_move,tin,new_world_G,

    World,parameters,time,space,agents,size,maxsize,addAgent!,removeAgent!,

    run!,give_birth,updateWorld!,update_clock!,updateBirthEvent!,
    updateDeathEvent!,#,runWorld_G!,runWorld_WF!,

    Simulation,add_entry!,get_tend,get_size,get_tspan,get_world,get_xnt,

    H_discrete,findclusters,var,covgeo,hamming,get_beta_div, get_alpha_div,
    get_local_abundance,get_dist_hist,get_pairwise_average_isolation,
    get_local_pairwise_average_isolation,
    truncvar,get_xhist_mat,
    update_afterbirth_std!,update_afterdeath_std!,

    generalised_gaussian,gaussian,ma,geomsmooth,arithsmooth,eth_grad_std,
    DiversityFunction,geomsmooth2D,arithsmooth2D,interpolate_df,groupby,numargs
    
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end