Commit 424e2674 authored by amitjans's avatar amitjans
Browse files

Add ex7/problem3

parent 2fc8b8f6
......@@ -10,13 +10,19 @@ using test_type = unsigned long;
template <class C>
void fill_container(const size_t & num_ops, C & container) {
// TODO: implement
// TODO: implement
for(test_type i = 0; i < num_ops ; i++) {
container[i] = i + 1;
}
}
template<typename C>
double measure_container(const size_t & num_ops,
const std::vector<test_type> & input) {
// TODO: implement
// TODO: implement
for(test_type i = 0; i < num_ops; i++) {
}
}
int main() {
......
# Require 3.1 for CMAKE_CXX_STANDARD property
cmake_minimum_required(VERSION 3.1)
project(PennaGenomeAnimalTesting)
set(CMAKE_CXX_STANDARD 11)
# Make it a Release build to add -O3 and -DNDEBUG flags by default
# Comment it out to revert to standard behaviour
set(CMAKE_BUILD_TYPE Release)
# Also add -march-native for Release builds
add_compile_options($<$<CONFIG:RELEASE>:-march=native>)
if(CMAKE_CXX_COMPILER_ID MATCHES "(C|c?)lang")
add_compile_options(-Weverything)
else()
add_compile_options(-Wall -Wextra -Wpedantic -g)
endif()
add_library(Penna STATIC genome.cpp animal.cpp population.cpp)
add_executable(main main.cpp)
target_link_libraries(main Penna)
/**
* Implementation of the Penna animal class.
* Programming Techniques for Scientific Simulations, ETH Zürich
*/
#include "animal.hpp"
#include <cassert>
#include <iostream>
namespace Penna {
// Definition of static data members
age_t Animal::bad_threshold_;
age_t Animal::maturity_age_;
double Animal::probability_to_get_pregnant_;
void Animal::set_maturity_age( age_t r ) {
maturity_age_ = r;
}
void Animal::set_probability_to_get_pregnant( double p ) {
probability_to_get_pregnant_ = p;
}
void Animal::set_bad_threshold( age_t t ) {
bad_threshold_ = t;
}
age_t Animal::get_bad_threshold() {
return bad_threshold_;
}
Animal::Animal() : gen_(), age_(0), pregnant_(false) {
}
Animal::Animal( const Genome& gen ) : gen_(gen), age_(0), pregnant_(false) {
}
bool Animal::is_dead() const {
return age_ > maximum_age || gen_.count_bad(age_) > bad_threshold_;
}
bool Animal::is_pregnant() const {
return pregnant_;
}
age_t Animal::age() const {
return age_;
}
void Animal::grow() {
assert( !is_dead() );
++age_;
if (age_ > maturity_age_ && !pregnant_) {
if (probability_to_get_pregnant_ > drand48()) {
pregnant_ = true;
}
}
}
Animal Animal::give_birth() {
assert( pregnant_ == true );
pregnant_ = false;
Genome child_genome = gen_;
// Note: this "should" return a copy such that we don't expose a freely callable mutate
// method but not doing it in-place is slow -> ideal use for C++11 move semantics
child_genome.mutate();
return Animal( child_genome );
}
} // end namespace Penna
/**
* Header for the Penna animal class.
* Programming Techniques for Scientific Simulations, ETH Zürich
*/
#ifndef ANIMAL_HPP
#define ANIMAL_HPP
#include "genome.hpp"
/// Penna namespace.
namespace Penna {
/// Animal with a Genome and age.
class Animal {
public:
static const age_t maximum_age = Genome::number_of_genes; ///< upper age limit
static void set_maturity_age( age_t ); ///< set maturity age
static void set_probability_to_get_pregnant ( double ); ///< set birth rate modifier
static void set_bad_threshold( age_t ); ///< set threshold for deletrious mutation
static age_t get_bad_threshold(); ///< get deletrious mutation threshold
Animal(); ///< default constructor: Uses all good genome
Animal( const Genome& ); ///< constructor using a given genome
bool is_dead() const; ///< get death status
bool is_pregnant() const; ///< get pregnancy status
age_t age() const; ///< get age
void grow(); ///< grow the animal older by one year
Animal give_birth(); ///< create baby with inherited, randomly mutated genes
Animal operator=(const Animal&);
private:
static age_t bad_threshold_; ///< number T of bad genes an animal can tolerate
static age_t maturity_age_; ///< maturity age parameter R
static double probability_to_get_pregnant_; ///< birth rate modifier b
const Genome gen_;
age_t age_;
bool pregnant_;
};
} // namespace Penna
#endif // ANIMAL_HPP
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